diff --git a/app/src/test/java/info/nightscout/androidaps/plugins/general/autotune/AutotunePrepTest.kt b/app/src/test/java/info/nightscout/androidaps/plugins/general/autotune/AutotunePrepTest.kt new file mode 100644 index 0000000000..74c6ff6e15 --- /dev/null +++ b/app/src/test/java/info/nightscout/androidaps/plugins/general/autotune/AutotunePrepTest.kt @@ -0,0 +1,250 @@ +package info.nightscout.androidaps.plugins.general.autotune + +import dagger.android.HasAndroidInjector +import info.nightscout.androidaps.R +import info.nightscout.androidaps.TestBaseWithProfile +import info.nightscout.androidaps.data.IobTotal +import info.nightscout.androidaps.data.LocalInsulin +import info.nightscout.androidaps.data.ProfileSealed +import info.nightscout.androidaps.data.PureProfile +import info.nightscout.androidaps.database.AppRepository +import info.nightscout.androidaps.database.data.Block +import info.nightscout.androidaps.database.data.TargetBlock +import info.nightscout.androidaps.database.entities.Bolus +import info.nightscout.androidaps.database.entities.Carbs +import info.nightscout.androidaps.database.entities.GlucoseValue +import info.nightscout.androidaps.interfaces.* +import info.nightscout.androidaps.plugins.general.autotune.data.* +import info.nightscout.androidaps.utils.DateUtil +import info.nightscout.androidaps.utils.JsonHelper +import info.nightscout.androidaps.utils.T +import info.nightscout.shared.logging.AAPSLogger +import info.nightscout.shared.sharedPreferences.SP +import org.json.JSONArray +import org.json.JSONObject +import org.junit.Assert +import org.junit.Before +import org.junit.Test +import org.mockito.Mock +import org.mockito.Mockito.`when` +import java.io.File +import java.util.* +import kotlin.collections.ArrayList + +class AutotunePrepTest : TestBaseWithProfile() { + @Mock lateinit var sp: SP + @Mock lateinit var autotuneFS: AutotuneFS + @Mock lateinit var injector: HasAndroidInjector + @Mock lateinit var activePlugin: ActivePlugin + @Mock lateinit var repository: AppRepository + lateinit var autotunePrep: AutotunePrep + lateinit var autotuneIob: TestAutotuneIob + lateinit var inputProfile: ATProfile + var min5mCarbImpact = 0.0 + var autotuneMin = 0.0 + var autotuneMax = 0.0 + var startDayTime = 0L + + + @Before + fun initData() { + TimeZone.setDefault(TimeZone.getTimeZone("GMT+2")) + val inputProfileJson = File("src/test/res/autotune/test1/profile.pump.json").readText() + inputProfile = atProfileFromOapsJson(JSONObject(inputProfileJson), dateUtil)!! + val inputIobJson = File("src/test/res/autotune/test1/oaps-iobCalc.2022-05-21.json").readText() //json files build with iob/activity calculated by OAPS + val iobOapsCalcul = buildIobOaps(JSONArray(inputIobJson)) + autotuneIob = TestAutotuneIob(aapsLogger, repository, profileFunction, sp, dateUtil, activePlugin, autotuneFS, iobOapsCalcul) + autotunePrep = AutotunePrep(sp, dateUtil, autotuneFS, autotuneIob) + } + + @Test + fun autotunePrepTest() { // Test if load from file of OpenAPS categorisation is Ok + val prepjson = File("src/test/res/autotune/test1/autotune.2022-05-21.json").readText() + val oapsPreppedGlucose = PreppedGlucose(JSONObject(prepjson), dateUtil) //prep data calculated by OpenAPS autotune + val oapsEntriesJson = File("src/test/res/autotune/test1/aaps-entries.2022-05-21.json").readText() + autotuneIob.glucose = buildGlucose(JSONArray(oapsEntriesJson)) + val oapsTreatmentsJson = File("src/test/res/autotune/test1/aaps-treatments.2022-05-21.json").readText() + autotuneIob.meals = buildMeals(JSONArray(oapsTreatmentsJson)) //Only meals is used in unit test, Insulin only used for iob calculation + autotuneIob.boluses = buildBoluses(oapsPreppedGlucose) //Values from oapsPrepData because linked to iob calculation method for TBR + `when`(sp.getDouble(R.string.key_openapsama_min_5m_carbimpact, 3.0)).thenReturn(min5mCarbImpact) + + val aapsPreppedGlucose = autotunePrep.categorizeBGDatums(inputProfile, inputProfile.localInsulin, false) + try { + aapsPreppedGlucose?.let { // compare all categorization calculated by aaps plugin (aapsPreppedGlucose) with categorization calculated by OpenAPS (oapsPreppedGlucose) + for (i in aapsPreppedGlucose.crData.indices) + Assert.assertTrue(oapsPreppedGlucose.crData[i].equals(aapsPreppedGlucose.crData[i])) + for (i in aapsPreppedGlucose.csfGlucoseData.indices) + Assert.assertTrue(oapsPreppedGlucose.csfGlucoseData[i].equals(aapsPreppedGlucose.csfGlucoseData[i])) + for (i in aapsPreppedGlucose.isfGlucoseData.indices) + Assert.assertTrue(oapsPreppedGlucose.isfGlucoseData[i].equals(aapsPreppedGlucose.isfGlucoseData[i])) + for (i in aapsPreppedGlucose.basalGlucoseData.indices) + Assert.assertTrue(oapsPreppedGlucose.basalGlucoseData[i].equals(aapsPreppedGlucose.basalGlucoseData[i])) + } + ?: Assert.fail() + } catch (e: Exception) { + Assert.fail() + } + } + + + + /** + * OpenAPS profile for Autotune only have one ISF value and one IC value + */ + fun atProfileFromOapsJson(jsonObject: JSONObject, dateUtil: DateUtil, defaultUnits: String? = null): ATProfile? { + try { + min5mCarbImpact = JsonHelper.safeGetDoubleAllowNull(jsonObject, "min_5m_carbimpact") ?: return null + autotuneMin = JsonHelper.safeGetDoubleAllowNull(jsonObject, "autosens_min") ?: return null + autotuneMax = JsonHelper.safeGetDoubleAllowNull(jsonObject, "autosens_max") ?: return null + val txtUnits = JsonHelper.safeGetStringAllowNull(jsonObject, "units", defaultUnits) ?: return null + val units = GlucoseUnit.fromText(txtUnits) + val dia = JsonHelper.safeGetDoubleAllowNull(jsonObject, "dia") ?: return null + val peak = JsonHelper.safeGetIntAllowNull(jsonObject, "insulinPeakTime") ?: return null + val localInsulin = LocalInsulin("insulin", peak, dia) + val timezone = TimeZone.getTimeZone(JsonHelper.safeGetString(jsonObject, "timezone", "UTC")) + val isfJson = jsonObject.getJSONObject("isfProfile") + val isfBlocks = ArrayList(1).also { + val isfJsonArray = isfJson.getJSONArray("sensitivities") + val value = isfJsonArray.getJSONObject(0).getDouble("sensitivity") + it.add(0,Block((T.hours(24).secs()) * 1000L, value)) + } + val icBlocks = ArrayList(1).also { + val value = jsonObject.getDouble("carb_ratio") + it.add(0,Block((T.hours(24).secs()) * 1000L, value)) + } + val basalBlocks = blockFromJsonArray(jsonObject.getJSONArray("basalprofile"), dateUtil) + ?: return null + val targetBlocks = ArrayList(1).also { + it.add(0, TargetBlock((T.hours(24).secs()) * 1000L, 100.0, 100.0)) + } + + val pure = PureProfile( + jsonObject = jsonObject, + basalBlocks = basalBlocks, + isfBlocks = isfBlocks, + icBlocks = icBlocks, + targetBlocks = targetBlocks, + glucoseUnit = units, + timeZone = timezone, + dia = dia + ) + return ATProfile(ProfileSealed.Pure(pure), localInsulin, profileInjector).also { it.dateUtil = dateUtil} + } catch (ignored: Exception) { + return null + } + } + + + fun blockFromJsonArray(jsonArray: JSONArray?, dateUtil: DateUtil): List? { + val size = jsonArray?.length() ?: return null + val ret = ArrayList(size) + try { + for (index in 0 until jsonArray.length() - 1) { + val o = jsonArray.getJSONObject(index) + val tas = o.getInt("minutes") * 60 + val next = jsonArray.getJSONObject(index + 1) + val nextTas = next.getInt("minutes") * 60 + val value = o.getDouble("rate") + if (tas % 3600 != 0) return null + if (nextTas % 3600 != 0) return null + ret.add(index, Block((nextTas - tas) * 1000L, value)) + } + val last: JSONObject = jsonArray.getJSONObject(jsonArray.length() - 1) + val lastTas = last.getInt("minutes") * 60 + val value = last.getDouble("rate") + ret.add(jsonArray.length() - 1, Block((T.hours(24).secs() - lastTas) * 1000L, value)) + } catch (e: Exception) { + return null + } + return ret + } + + fun buildBoluses(preppedGlucose: PreppedGlucose): ArrayList { //if categorization is correct then I return for dose function the crInsulin calculated in Oaps + val boluses: ArrayList = ArrayList() + try { + for (i in preppedGlucose.crData.indices) { + boluses.add( + Bolus( + timestamp = preppedGlucose.crData[i].crEndTime, + amount = preppedGlucose.crData[i].crInsulin, + type = Bolus.Type.NORMAL + ) + ) + } + } catch (e: Exception) { } + return boluses + } + + fun buildMeals(jsonArray: JSONArray): ArrayList { + val list: ArrayList = ArrayList() + try { + for (index in 0 until jsonArray.length()) { + val json = jsonArray.getJSONObject(index) + val value = JsonHelper.safeGetDouble(json, "carbs", 0.0) + val timestamp = JsonHelper.safeGetLong(json, "date") + if (value > 0.0 && timestamp > startDayTime) { + list.add(Carbs(timestamp=timestamp, amount = value, duration = 0)) + } + } + } catch (e: Exception) { } + return list + } + + fun buildGlucose(jsonArray: JSONArray): List { + val list: ArrayList = ArrayList() + try { + for (index in 0 until jsonArray.length()) { + val json = jsonArray.getJSONObject(index) + val value = JsonHelper.safeGetDouble(json, "sgv") + val timestamp = JsonHelper.safeGetLong(json, "date") + list.add(GlucoseValue(raw = value, noise = 0.0, value = value, timestamp = timestamp, sourceSensor = GlucoseValue.SourceSensor.UNKNOWN, trendArrow = GlucoseValue.TrendArrow.FLAT)) + } + } catch (e: Exception) { } + if (list.size > 0) + startDayTime = list[list.size-1].timestamp + return list + } + + fun buildIobOaps(jsonArray: JSONArray): ArrayList { //if categorization is correct then I return for dose function the crInsulin calculated in Oaps + val list: ArrayList = ArrayList() + for (index in 0 until jsonArray.length()) { + val json = jsonArray.getJSONObject(index) + val time = JsonHelper.safeGetLong(json,"date") + val iob = JsonHelper.safeGetDouble(json, "iob") + val activity = JsonHelper.safeGetDouble(json, "activity") + val iobTotal = IobTotal(time) + iobTotal.iob = iob + iobTotal.activity = activity + list.add(iobTotal) + } + return list + } + + class TestAutotuneIob( + val aapsLogger: AAPSLogger, + repository: AppRepository, + val profileFunction: ProfileFunction, + val sp: SP, + val dateUtil: DateUtil, + val activePlugin: ActivePlugin, + autotuneFS: AutotuneFS, + val iobOapsCalcul: ArrayList + ) : AutotuneIob( + aapsLogger, + repository, + profileFunction, + sp, + dateUtil, + activePlugin, + autotuneFS + ) { + override fun getIOB(time: Long, localInsulin: LocalInsulin): IobTotal { + var bolusIob = IobTotal(time) + iobOapsCalcul.forEach { + if (it.time == time) + return it + } + return bolusIob + } + } +} diff --git a/app/src/test/res/autotune/test1/Convert_Log2JSON.xlsx b/app/src/test/res/autotune/test1/Convert_Log2JSON.xlsx new file mode 100644 index 0000000000..5f4d84fff9 Binary files /dev/null and b/app/src/test/res/autotune/test1/Convert_Log2JSON.xlsx differ diff --git a/app/src/test/res/autotune/test1/oaps-iobCalc.2022-05-21.json b/app/src/test/res/autotune/test1/oaps-iobCalc.2022-05-21.json new file mode 100644 index 0000000000..92304dbf45 --- /dev/null +++ b/app/src/test/res/autotune/test1/oaps-iobCalc.2022-05-21.json @@ -0,0 +1,286 @@ +[ + { "iob": 5.249, "activity": 0.0391, "date": 1653099848000}, + { "iob": 5.292, "activity": 0.0438, "date": 1653100148000}, + { "iob": 4.964, "activity": 0.047, "date": 1653100449000}, + { "iob": 4.674, "activity": 0.0489, "date": 1653100748000}, + { "iob": 4.377, "activity": 0.0498, "date": 1653101048000}, + { "iob": 4.077, "activity": 0.0498, "date": 1653101348000}, + { "iob": 3.73, "activity": 0.0491, "date": 1653101648000}, + { "iob": 3.389, "activity": 0.0476, "date": 1653101948000}, + { "iob": 3.055, "activity": 0.0457, "date": 1653102249000}, + { "iob": 2.782, "activity": 0.0436, "date": 1653102548000}, + { "iob": 2.47, "activity": 0.0411, "date": 1653102848000}, + { "iob": 2.22, "activity": 0.0386, "date": 1653103149000}, + { "iob": 1.935, "activity": 0.0358, "date": 1653103448000}, + { "iob": 1.711, "activity": 0.0332, "date": 1653103748000}, + { "iob": 1.452, "activity": 0.0304, "date": 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